Browsing by Author "Palma, Marco"
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Item Open Access High resolution orthomosaics of African coral reefs: a tool for wide-scale benthic monitoring(MDPI, 2017-07-08) Palma, Marco; Rivas Casado, Monica; Pantaleo, Ubaldo; Cerrano, CarloCoral reefs play a key role in coastal protection and habitat provision. They are also well known for their recreational value. Attempts to protect these ecosystems have not successfully stopped large-scale degradation. Significant efforts have been made by government and research organizations to ensure that coral reefs are monitored systematically to gain a deeper understanding of the causes, the effects and the extent of threats affecting coral reefs. However, further research is needed to fully understand the importance that sampling design has on coral reef characterization and assessment. This study examines the effect that sampling design has on the estimation of seascape metrics when coupling semi-autonomous underwater vehicles, structure-from-motion photogrammetry techniques and high resolution (0.4 cm) underwater imagery. For this purpose, we use FRAGSTATS v4 to estimate key seascape metrics that enable quantification of the area, density, edge, shape, contagion, interspersion and diversity of sessile organisms for a range of sampling scales (0.5 m × 0.5 m, 2 m × 2 m, 5 m × 5 m, 7 m × 7 m), quadrat densities (from 1–100 quadrats) and sampling strategies (nested vs. random) within a 1655 m2 case study area in Ponta do Ouro Partial Marine Reserve (Mozambique). Results show that the benthic community is rather disaggregated within a rocky matrix; the embedded patches frequently have a small size and a regular shape; and the population is highly represented by soft corals. The genus Acropora is the more frequent and shows bigger colonies in the group of hard corals. Each of the seascape metrics has specific requirements of the sampling scale and quadrat density for robust estimation. Overall, the majority of the metrics were accurately identified by sampling scales equal to or coarser than 5 m × 5 m and quadrat densities equal to or larger than 30. The study indicates that special attention needs to be dedicated to the design of coral reef monitoring programmes, with decisions being based on the seascape metrics and statistics being determined. The results presented here are representative of the eastern South Africa coral reefs and are expected to be transferable to coral reefs with similar characteristics. The work presented here is limited to one study site and further research is required to confirm the findings.Item Open Access Quantifying coral reef composition of recreational diving sites: a structure from motion approach at seascape scale(MDPI, 2019-12-16) Palma, Marco; Magliozzi, Chiara; Rivas Casado, Monica; Pantaleo, Ubaldo; Fernandes, João; Coro, Gianpaolo; Cerrano, Carlo; Leinster, PaulRecreational diving is known to have both direct and indirect impacts on coral habitats. Direct impacts include increasing sedimentation, breaks and diseases that lead to a decrease in the richness and abundances of hard corals. Indirect impacts include urban development, land management and sewage disposal. The ecological effects of scuba diving on the spatial composition metrics of reef benthic communities are less well studied, and they have not been investigated at seascape scale. In this study, we combine orthomosaics derived from Structure from Motion (SfM) photogrammetry and data-mining techniques to study the spatial composition of reef benthic communities of recreational diving sites at seascape scale (>25 m 22 ). The study focuses on the case study area of Ponta do Ouro Partial Marine Reserve (Mozambique). Results showed that scuba-diving resistant taxa (i.e., sponges and algae) were abundant at small (>850 m 22 ) and highly dived sites (>3000 dives yr −1−1 ), characterized by low diversity and density, and big organisms with complex shapes. Fragile taxa (i.e., Acropora spp.) were abundant at low (365 dives yr −1−1 ) and moderately dived sites (1000–3000 dives yr −1−1 ) where the greater depth and wider coral reef surfaces attenuate the abrasive effect of waves and re-suspended sediments. Highest taxa diversity and density, and lowest abundance of resistant taxa were recorded at large >2000 m 22 ) and rarely dived sites. This study highlights the potential applications for a photogrammetric approach to support monitoring programs at Ponta do Ouro Partial Marine Reserve (Mozambique), and provides some insight to understand the influence of scuba diving on benthic communities.Item Open Access SfM-based method to assess gorgonian forests (Paramuricea clavata (Cnidaria, Octocorallia))(Elsevier, 2018-07-21) Palma, Marco; Rivas Casado, Monica; Pantaleo, Ubaldo; Pavoni, Gaia; Pica, Daniela; Cerrano, CarloAnimal forests promote marine habitats morphological complexity and functioning. The red gorgonian, Paramuricea clavata, is a key structuring species of the Mediterranean coralligenous habitat and an indicator species of climate effects on habitat functioning. P. clavata metrics such as population structure, morphology and biomass inform on the overall health of coralligenous habitats, but the estimation of these metrics is time and cost consuming, and often requires destructive sampling. As a consequence, the implementation of long-term and wide-area monitoring programmes is limited. This study proposes a novel and transferable Structure from Motion (SfM) based method for the estimation of gorgonian population structure (i.e., maximal height, density, abundance), morphometries (i.e., maximal width, fan surface) and biomass (i.e., coenenchymal Dry Weight, Ash Free Dried Weight). The method includes the estimation of a novel metric (3D canopy surface) describing the gorgonian forest as a mosaic of planes generated by fitting multiple 5 cm × 5 cm facets to a SfM generated point cloud. The performance of the method is assessed for two different cameras (GoPro Hero4 and Sony NEX7). Results showed that for highly dense populations (17 colonies/m2), the SfM-method had lower accuracies in estimating the gorgonians density for both cameras (60% to 89%) than for medium to low density populations (14 and 7 colonies/m2) (71% to 100%). Results for the validation of the method showed that the correlation between ground truth and SfM estimates for maximal height, maximal width and fan surface were between R2 = 0.63 and R2 = 0.9, and R2 = 0.99 for coenenchymal surface estimation. The methodological approach was used to estimate the biomass of the gorgonian population within the study area and across the coralligenous habitat between −25 to −40 m depth in the Portofino Marine Protected Area. For that purpose, the coenenchymal surface of sampled colonies was obtained and used for the calculations. Results showed biomass values of dry weight and ash free dry weight of 220 g and 32 g for the studied area and to 365 kg and 55 Kg for the coralligenous habitat in the Marine Protected Area. This study highlighted the feasibility of the methodology for the quantification of P. clavata metrics as well as the potential of the SfM-method to improve current predictions of the status of the coralligenous habitat in the Mediterranean sea and overall management of threatened ecosystems.Item Open Access The use of unmanned aerial vehicles to estimate direct tangible losses to residential properties from flood events: A case study of Cockermouth following the Desmond storm(2018-09-26) Rivas Casado, Monica; Irvine, Tracy; Johnson, Sarah; Palma, Marco; Leinster, PaulDamage caused by flood events is expected to increase in the coming decades driven by increased land use pressures and climate change impacts. The insurance sector needs accurate and efficient loss adjustment methodologies for flood events. These can include remote sensing approaches that enable the rapid estimation of (i) damage caused to property as well as (ii) the number of affected properties. Approaches based on traditional remote sensing methods have limitations associated with low-cloud cover presence, oblique viewing angles, and the resolution of the geomatic products obtained. Unmanned aerial vehicles (UAVs) are emerging as a potential tool for post-event assessment and provide a means of overcoming the limitations listed above. This paper presents a UAV-based loss-adjustment framework for the estimation of direct tangible losses to residential properties affected by flooding. For that purpose, features indicating damage to property were mapped from UAV imagery collected after the Desmond storm (5 and 6 December 2015) over Cockermouth (Cumbria, UK). Results showed that the proposed framework provided an accuracy of 84% in the detection of direct tangible losses compared with on-the-ground household-by-household assessment approaches. Results also demonstrated the importance of pluvial and, from eye witness reports, lateral flow flooding, with a total of 168 properties identified as flooded falling outside the fluvial flood extent. The direct tangible losses associated with these additional properties amounted to as high as £3.6 million. The damage-reducing benefits of resistance measures were also calculated and amounted to around £4 million. Differences in direct tangible losses estimated using the proposed UAV approach and the more classic loss-adjustment methods relying on the fluvial flood extent was around £1 million—the UAV approach providing the higher estimate. Overall, the study showed that the proposed UAV approach could make a significant contribution to improving the estimation of the costs associated with urban flooding, and responses to flooding events, at national and international levels.